miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|157859257|gb|EX482894.1|EX482894 GCCCTGTCTTTATTATTATTACTTTTGTCACATATCATAAAGGCACTTGTTGTAATTTCAATAATGAAATTGTGTTTTTT
TAAATTAATGAACAGGAATTGAGACTGATATCTCCACTCGTCATTTCTGGCTCAATTTCCAATGGTTTGCTCTCAATAAC
AATATTCCTCATACATCCTACGTAGTCATGCTGCGTTGAAAGACCTCTTAGTCTTCTCTTCTTGGGATGTCCACCTATAT
ATAAACCGTGGTTAGTGTCCGTAGATGATACTCCAGGAACTCCGATGGCTGCTGGAGAAAATATTCCATCGACAGAGACT
GTGACAACGTTTTTCGCTTTTACAGCTTGAATACGATGCCACTTTCCATCACAGAGACTGAAAGTTGTTTTGGGTTTAAA
GCTACTAAAAATAGGCCCTCTTCCATTATCTGCGGTGAATTGTATTGCTCCGTCAATCATCTGGAGAATGAGATAGTCCT
TCCTACCCTGGATAGCTAAGAGTATACCAGAGATATTTCGAGGCTTAATGTCCATGTTAATATCAAAGTCCATTCCAACA
CGATACCTAGGTTGAACAAGAATATGCCCTCCCTTGGATCCAAAGAAACTTCCTTGCTCAACCATATCAGAGCAAGCAAT
CACGCCATTACTGTTATTCTTACTCCATTTTCCGATTCCCCCC




Most similar to sp|Q00174|LAMA_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster
            GN=LanA PE=1 SV=2
          Length = 3712

 Score =  129 bits (323), Expect = 2e-29
 Identities = 63/188 (33%), Positives = 104/188 (55%), Gaps = 1/188 (0%)
 Frame = -2

Query: 646  GVIACSDMVEQGSFFGSKGGHILVQPRYRVGMDFDINMDIKPRNISGILLAIQGRKDYLI 467
            GV+ CS+ VE+G FF ++   + +   + VG +  I+ D +PR+ +G+L ++ G+  Y I
Sbjct: 3524 GVVPCSEQVERGLFFNNQKAFVKIFDHFDVGTEMKISFDFRPRDPNGLLFSVHGKNSYAI 3583

Query: 466  LQMIDGAIQFTADNGRGPIFSS-FKPKTTFSLCDGKWHRIQAVKAKNVVTVSVDGIFSPA 290
            L+++D  + FT       I S+ +K     S CDGK   +QA+K+K V+ ++VD I S  
Sbjct: 3584 LELVDNTLYFTVKTDLKNIVSTNYKLPNNESFCDGKTRNVQAIKSKFVINIAVDFISSNP 3643

Query: 289  AIGVPGVSSTDTNHGLYIGGHPKKRRLRGLSTQHDYVGCMRNIVIESKPLEIEPEMTSGD 110
             +G  G   T TN  L++GGH   +R  G+ T+  + GC+  + +  + + I P M  GD
Sbjct: 3644 GVGNEGSVITRTNRPLFLGGHVAFQRAPGIKTKKSFKGCISKVEVNQRMINITPNMVVGD 3703

Query: 109  ISLNSCSL 86
            I    C L
Sbjct: 3704 IWQGYCPL 3711